Not medical advice. The Journal of Biohacking reports published research and teaching models. Nothing on this page is medical advice, a diagnosis, or a recommendation to use any compound, product, or therapy. Where a dose appears, it is a figure reported in a cited study or by its sponsor, not an instruction. Editorial position on dosing.
Inside the machine that makes almost all of your energy.
This is the electron transport chain, five protein machines embedded in the inner membrane of every mitochondrion you own. Food becomes electrons, electrons pump protons, and a spinning molecular turbine turns that pressure into ATP, the currency every cell spends. Drag the controls. Break it. Fix it. Then see which popular “mitochondrial” interventions actually move the needle, including the mitochondrial peptides MOTS-c and SS-31 (elamipretide), and which ones the trials say don’t.
The living membrane, in 3D
Drag to orbit the chain. Electrons flow from Complex I to oxygen, protons gather above the gold membrane, then rush back down through the spinning turbine.
Run the experiment
Presets first, then break things yourself.
More mitochondria, better ones: biogenesis via PGC-1α and faster mitophagy. In one RCT, aerobic training raised muscle mitochondrial respiration ~25% in older adults, in the placebo arm.
EstablishedClears damaged mitochondria for recycling. Real strength signals in two RCTs, but both missed their primary endpoints, and both were sponsor-run.
EmergingMetformin mildly inhibits Complex I. In two RCTs it blunted training gains, and abolished the training-induced rise in mitochondrial respiration. A longevity drug that fights your workout.
Emerging, trade-offStatins block the mevalonate pathway that also makes CoQ10. Watch what a drained shuttle does to flow.
Mechanism establishedThese two toggles show where each peptide would act if its preclinical mechanism holds in a person. The simulator animates the mechanism. It is not evidence the benefit happens. Read §03 before you stack anything.
A 16-amino-acid peptide encoded inside mitochondrial DNA (12S rRNA). It blocks the folate-methionine cycle so AICAR builds up and switches on AMPK, the same fuel-burning, PGC-1α biogenesis signal exercise sends. In the model: more fuel pulled in and oxidised, a small biogenesis lift. In humans: no trial of MOTS-c itself has ever been run.
Speculative, 0 human trials of MOTS-c itselfA synthetic tetrapeptide that concentrates in the inner membrane and binds cardiolipin, the lipid that holds cristae shape and organises the complexes. In the model: the chain holds together, electrons leak less, ROS falls at the source, with the biggest rescue when mitochondria are already damaged. In humans: real trials, one very narrow approval, and a large trial that missed (see §03).
Emerging, disease trials Speculative, healthy optimisationA redox dye that accepts electrons from NADH via reductases and donates them to cytochrome c, bypassing Complexes I to III. In the model: flow is rescued when entry or the shuttle is blocked, but each bypassed electron pumps fewer protons, so it earns less ATP. Helpful when the chain is stuck, wasteful when it is not. Serious interaction warnings apply (see §03). No dosing guidance is given on this page.
Established, methemoglobinaemia treatment Speculative, healthy optimisationFive machines, one pressure system
Think less “powerhouse of the cell,” more hydroelectric dam. The complexes are pumps building pressure behind a wall; ATP synthase is the turbine the pressure spins. Per pair of electrons from NADH, roughly 2.5 ATP are made; from FADH₂, about 1.5, because FADH₂ skips the first pump.
The collector
Takes electrons from NADH, the main delivery from your food, and hands them to CoQ. Metformin leans on this machine. The biggest single ROS leak site lives here.
The side door
Accepts electrons from FADH₂ (made by burning fat and in the Krebs cycle). Useful flow, but it pumps nothing, so each electron earns less ATP.
The Q-cycle
Receives electrons from the CoQ pool and passes them to cytochrome c, using a clever two-step cycle. The second major ROS leak site when the chain backs up.
The exit
Delivers electrons to oxygen, the reason you breathe. Half an O₂ plus two protons becomes water. No oxygen, no exit, total gridlock upstream.
The turbine
ATP synthase is a rotary motor, it physically spins (~100 revolutions/sec) as protons flow back down their gradient, stamping ADP + Pi into ATP on every turn.
What actually moves this machine?
Every §1 “mitochondrial” product in the biohacking market touches this one diagram. Here is where each one acts, and what the human trials actually found. Grades are for the optimization claim in healthy people, not disease treatment.
NR / NMN, refill the NAD⁺ pool
Established: blood NAD⁺ rises in essentially every competent trial, NR 1,000 mg/day raised it ~60% over 6 weeks (n=30, ages 55–79); NMN 300–900 mg/day raised NAD⁺ dose-dependently over 60 days (n=80). Not shown: NR at 2,000 mg/day for 12 weeks in 40 obese insulin-resistant men did not improve insulin sensitivity, glucose disposal, or energy expenditure despite higher NAD⁺, and pooled analyses in adults over 60 find no clear benefit for muscle mass, grip, or walking speed. Raising the fuel gauge is not the same as fixing the engine.
Emerging, biomarker Speculative, outcomesUrolithin A, clear the broken units
The best functional dataset of any mitochondrial supplement, and still a cautionary tale. In ATLAS (n=88 untrained adults, 4 months), hamstring strength rose ~12% vs placebo and biopsy mitophagy proteins increased, but the primary endpoint, peak power output, did not improve significantly. In older adults (n=66), muscle endurance improved while 6-minute walk and maximal ATP production did not. Both flagship trials were run by the sponsor, Amazentis.
EmergingCoQ10, the shuttle itself
Strong in disease: in Q-SYMBIO (n=420, moderate–severe heart failure, 300 mg/day for 2 years), major cardiovascular events were 15% vs 26% on placebo (HR 0.50) and all-cause death 10% vs 18%. Weak for optimization: fatigue benefits in meta-analyses come mostly from ill populations (heart failure, MS, fibromyalgia). Nothing yet shows a healthy person with adequate CoQ makes more ATP by adding more. It also interacts with warfarin.
Established, heart-failure adjunct Speculative, healthy optimizationMetformin, the brake nobody mentions
Part of metformin’s glucose-lowering action is mild Complex I inhibition. In the MASTERS trial (n≈94 older adults, 14 weeks of resistance training), lean-mass gains were +1.95% on placebo vs +0.41% on metformin. In a second RCT (n=53, 12 weeks aerobic), metformin blunted VO₂max gains and abolished the training-induced increase in muscle mitochondrial respiration (~25% in placebo). For a publication about going beyond baseline, that trade-off is the story.
Established, type-2 diabetes Emerging evidence of harm to training adaptationPQQ, “builds new mitochondria”?
The biogenesis claim comes from rodents and cell culture. Human trials are a handful of small studies (largest n≈64) reporting modest cognitive-domain signals, and no human trial has ever measured mitochondrial biogenesis, density, or function as an outcome. The popular slogan “PQQ builds new mitochondria, CoQ10 runs the existing ones” is a memorable mechanism story with no human mechanistic evidence behind it.
SpeculativeExercise, the benchmark everything chases
Training does in humans what the supplements are trying to mimic: raises PGC-1α, mitochondrial respiration, and mitophagy flux, measured directly in muscle. Cardiorespiratory fitness shows a dose-dependent, no-upper-limit association with lower mortality in 122,007 adults (elite fitness HR 0.20 vs low fitness), and VO₂max is trainable at every adult age. Any mitochondrial content that leads with a pill before training has the evidence hierarchy upside down. Try the “Trained athlete” preset, that’s this card, visualized.
EstablishedPeptides on the chain: MOTS-c, SS-31, and the rest
This is the part you asked for, and it matters because these peptides do not all touch the chain in the same place. One is a signal the mitochondrion sends out to the rest of the cell. One is a repair patch for the membrane the chain sits in. The rest of the famous mitochondrial peptides mostly act somewhere else, or have no direct chain data at all. Place first, hype second. Methylene blue is included here even though it is not a peptide, because it is the other compound in the stack conversation that touches the chain directly, as a bypass around the first three complexes.
MOTS-c
Site: made from mitochondrial DNA, exported to the cytosol and blood. Chain effect is indirect: folate cycle block, AICAR rises, AMPK switches on, glucose uptake and fat oxidation rise, PGC-1α signals for more mitochondria over time. It does not carry electrons and it does not sit in any complex. Think thermostat, not turbine part.
SS-31 / elamipretide
Site: the inner membrane itself, bound to cardiolipin between and beneath the complexes. Chain effect is direct and structural: cristae stay folded, complexes and cytochrome c stay organised, electrons are less likely to leak at Complexes I and III. That is why its clearest model effect is lower ROS and higher efficiency, not more fuel.
Humanin, BPC-157, TB-500, GHK-Cu
Humanin is the other well known mitochondrial-derived peptide (24 amino acids, from 16S rRNA). In isolated mitochondria under oxidative stress it dampened Complex I and III activity and cut ROS, a protective brake, not an accelerator. BPC-157, TB-500 and injectable GHK-Cu have no direct electron transport chain mechanism shown in humans. Lumping them in as mitochondrial energy peptides is a category error.
MOTS-c, the exercise signal with no human trial
Why people care: MOTS-c is genuinely unusual. It is a 16-amino-acid peptide encoded in the 12S rRNA region of mitochondrial DNA, not nuclear DNA. Circulating levels fall with age in human cohorts, and a genetic variant (m.1382A>C) has been linked to metabolic traits and longevity in Japanese cohorts. In mice it improves insulin sensitivity and exercise capacity, and exercise itself raises circulating MOTS-c in humans.
What is missing: there is no human trial of MOTS-c itself. The only trial people cite is for a modified analog, CB4211 from CohBar, in 88 volunteers over 28 days. It cleared safety, showed no clear benefit, and the sponsor dissolved and the program stopped. The FDA flagged immune reaction risk for this class. Everything else is animal work, cell work, and observational links between natural levels and health.
Community practice, anecdotal: 5 to 10 mg subcutaneously several times a week as a mitochondrial exercise mimetic, often pre-workout, per the corpus. That protocol has never been tested as a protocol.
SpeculativeSS-31 / elamipretide, the membrane stabiliser
Mechanism: SS-31 is a synthetic aromatic-cationic tetrapeptide (D-Arg-Dmt-Lys-Phe-NH2). It concentrates roughly 1,000-fold in the inner membrane, binds cardiolipin, and stabilises the cardiolipin and cytochrome c interaction. Unlike a normal antioxidant, it does not mop up ROS after they form. It reduces leak at the source by keeping the chain organised, and it makes the permeability transition pore harder to open under stress. It helps struggling mitochondria most, and does comparatively little in healthy young ones in preclinical work.
The approval, stated precisely: on 19 September 2025 the FDA granted accelerated approval to elamipretide as Forzinity, to improve muscle strength in adult and paediatric patients with Barth syndrome weighing at least 30 kg. Barth syndrome is an ultra-rare genetic disorder of cardiolipin remodelling (TAZ gene), so the drug and the disease match at the exact lipid. Continued approval depends on a confirmatory trial.
Established, Barth syndrome only, accelerated approval Speculative, healthy optimisationSS-31, the trial record behind the approval
TAZPOWER (Barth syndrome): the randomised blinded phase enrolled just 12 patients in a crossover (40 mg daily subcutaneously for 12 weeks per period) and did not reach significance on its primary endpoints in that blinded phase. Ten patients continued into an open-label extension. At week 168, the extension reported a 96.1 metre improvement in 6-minute walk distance (p = .003) and improved knee extensor strength, the intermediate endpoint the accelerated approval rests on. Small, open-label at the decisive stage, and in a disease with no prior approved treatment.
MMPOWER-3 (primary mitochondrial myopathy): the larger, cleaner test went the other way. In 218 adults over 24 weeks at the same 40 mg daily dose, both primary endpoints missed. The difference in 6-minute walk was -3.2 metres in favour of placebo (95% CI -18.7 to 12.3, p = 0.69) and fatigue differed by -0.07 (p = 0.37). Heart failure and dry age-related macular degeneration trials for elamipretide also missed their primary endpoints.
Older adults signal: in 39 adults aged 60 to 85 with low muscle mitochondrial function, a single treatment gave a short term rise in maximal ATP production capacity (percentage change p = .045, absolute change p = .055) that was absent at day 7, with no significant benefit on the prespecified hand muscle fatigue test (PMID 34264994). A measurable blip in ATP capacity is not a lasting energy benefit.
Emerging, mixed human trialsMethylene blue, the bypass that trades efficiency for flow
Mechanism: methylene blue cycles between its oxidised form and its reduced form, leucomethylene blue. It accepts electrons from NADH via cellular reductases and donates them directly to cytochrome c. That skips Complexes I, II and III entirely, so electrons can still reach Complex IV and oxygen when the front of the chain is damaged or blocked. The trade is built into the diagram: the bypassed complexes are the proton pumps, so a bypassed electron earns less ATP than a full journey. It also inhibits monoamine oxidase, which is a primary drug action, not a side footnote.
Evidence: methylene blue is FDA approved for acquired methemoglobinaemia, a blood disorder, and has a long clinical history as a dye and treatment in specific hospital settings. For cognition, longevity and healthy mitochondrial optimisation, there is no large, well powered, double blind RCT in healthy people showing benefit. The human cognition and neuroprotection literature is early, small and mixed, and the strongest claims rest on the same bypass mechanism shown above plus animal work.
Safety, the part the marketing skips: methylene blue is a potent MAO inhibitor. Combined with SSRIs, SNRIs, other MAO inhibitors, tricyclics, tramadol, triptans or other serotonergic drugs it has caused serotonin syndrome, including deaths, which prompted an FDA Drug Safety Communication in 2011. In people with G6PD deficiency it can cause acute haemolytic anaemia and is contraindicated for that group. Its redox action also flips with dose: antioxidant behaviour at low exposure can become pro-oxidant at higher exposure. No dosing instructions are given here, deliberately. This is a prescription medicine with real interactions, not a casual nootropic dye.
Established, methemoglobinaemia Speculative, optimisation and cognitionHumanin and the other mitochondrial-derived peptides
Humanin (24 amino acids, encoded in the 16S rRNA region) was the first mitochondrial-derived peptide found, in 2001. It is cytoprotective in cell and animal work: it binds pro-apoptotic proteins such as Bax, blocks cytochrome c release, and helps preserve membrane potential under stress. In isolated cardiac mitochondria exposed to hydrogen peroxide, its potent analog HNG reduced ROS in part by decreasing Complex I activity. That is a protective trade, less flow for less damage, and it is the opposite of a simple energy booster story.
The small humanin-like peptides (SHLP1 to 6) sit in the same family and are earlier still. For humanin, SHLPs, BPC-157, TB-500 and injectable GHK-Cu combined, the corpus found zero modern controlled human efficacy trials for mitochondrial or energy outcomes. BPC-157 had 35 preclinical studies to 1 small retrospective clinical series in a 2024 systematic review. That does not prove they do nothing. It proves no one has shown, in a controlled human trial, that they move this chain.
SpeculativeTry it live: scroll back to the simulator, turn on Aged and sedentary, then add SS-31 alone and watch ROS fall more than ATP rises. Then add MOTS-c and watch fuel flow rise instead. That difference, protection versus signalling, is the whole lesson of this section in ten seconds.
The full atlas: every popular molecule, placed on the chain
The simulator above only has room for a few toggles. This atlas places the wider biohacking shelf on the same diagram, peptides, small molecules, nutrients, and lifestyle signals, sorted by where they act. Filter by site. A card that says Not on this chain is not an insult, it is a placement finding: the compound may do something elsewhere, but it does not move electrons here.
NR and NMN
Raise the NAD+ pool that Complex I draws from. Blood NAD+ rises reliably in trials, roughly 60% on NR 1,000 mg per day in one 6 week study. Functional outcomes in healthy people remain unproven.
Acetyl-L-carnitine, ALCAR
Carnitine shuttles long chain fatty acids into the matrix for beta oxidation, feeding NADH and FADH2 to Complexes I and II. The classic aged rat work from the Ames lab paired ALCAR with alpha-lipoic acid and partly reversed mitochondrial decline. Human performance trials are mixed, including a 2025 cyclist trial with no aerobic benefit.
Alpha-lipoic acid, ALA
A mitochondrial cofactor for the enzyme complexes that make NADH, and a redox recycler that can regenerate vitamin C, vitamin E, CoQ10, and glutathione in test systems. Human data are strongest, and still mixed, in diabetic neuropathy. It can lower blood glucose, so it interacts with diabetes medicines.
Creatine monohydrate
Not a chain compound at all, and one of the best evidenced items on this page. Phosphocreatine stores the ATP that Complex V makes and releases it in milliseconds during hard effort, via the creatine kinase shuttle between mitochondria and muscle fibres. Strength evidence with resistance training is strong. Brain and longevity claims are much weaker.
Magnesium and B vitamins
Riboflavin (B2) is built into Complexes I and II as FAD, niacin (B3) becomes NAD+, thiamine feeds the Krebs cycle, and magnesium is required for ATP to be biologically active as Mg-ATP. Correcting a deficiency restores flow. Adding more on top of sufficiency has no shown chain benefit.
CoQ10 and ubiquinol
The only mobile electron shuttle between Complexes I and II and Complex III. Strong adjunct evidence in heart failure (Q-SYMBIO, n=420), weak evidence for healthy optimisation. Interacts with warfarin.
SS-31, elamipretide
Binds cardiolipin, holds cristae shape and complex organisation, and cuts electron leak at the source. FDA accelerated approval as Forzinity on 19 September 2025, for Barth syndrome only. The larger MMPOWER-3 myopathy trial missed both primary endpoints.
Methylene blue
Carries electrons from NADH straight to cytochrome c, bypassing Complexes I to III. Flow can recover when the front of the chain is blocked, at the cost of the protons those complexes would have pumped. A potent MAO inhibitor, with serotonin syndrome risk alongside serotonergic drugs, and a haemolysis risk in G6PD deficiency.
MOTS-c
A 16 amino acid peptide encoded in mitochondrial DNA. It raises AICAR, switches on AMPK, and signals for glucose uptake, fat oxidation, and over time, PGC-1alpha driven biogenesis. Strong mouse data. No human trial of MOTS-c itself has ever been run.
Urolithin A
A gut metabolite of pomegranate ellagitannins that promotes PINK1 and Parkin mitophagy, clearing damaged units. Two sponsor run RCTs showed real strength and endurance signals while missing primary endpoints.
Spermidine
A dietary polyamine that induces autophagy, in part through eIF5A hypusination and TFEB. Mouse cardiac benefit disappeared when the autophagy gene Atg5 was deleted, which is a clean mechanism test. Human outcome data are thin, and a 12 month cognition trial in older adults with subjective decline found no memory benefit.
PQQ
Marketed as a PGC-1alpha biogenesis trigger. The claim rests on rodent and cell work. No human trial has measured mitochondrial biogenesis, density, or function as an outcome.
NAC and glutathione support
N-acetylcysteine supplies cysteine for glutathione, the main soluble antioxidant that disposes of peroxide after ROS form. That is downstream cleanup, different from SS-31, which reduces leak at the source. Human energy and performance outcomes for NAC in healthy people are mixed and context specific.
Sulforaphane
From broccoli sprouts. Activates Nrf2, the switch that builds the cell its own antioxidant enzymes, the same pathway exercise and alpha-lipoic acid touch. A signalling nudge toward defence, not an electron carrier, and human mitochondrial outcome data are early.
Metformin and berberine
Both lean on Complex I, metformin as a prescription diabetes drug with trial evidence of blunted training adaptation, berberine as a supplement AMPK activator with the same mechanistic family and far thinner human data. Either can be the right drug for the right person. Neither is a free mitochondrial upgrade for a healthy trainee.
Zone 2, intervals, and resistance training
The benchmark. Training raises PGC-1alpha, mitochondrial respiration, mitophagy flux, capillary density, and oxygen delivery at once, measured directly in human muscle. Fitness shows a dose dependent association with lower mortality in 122,007 adults, with no upper limit found.
Sleep and morning light
Sleep loss measurably impairs glucose handling and next day performance, and circadian misalignment disrupts the daily rhythm of mitochondrial function. Morning light anchors that rhythm. Neither is a molecule, both set the conditions the chain runs under.
Fasting and time restricted eating
Energy scarcity raises the NAD+ to NADH ratio and AMPK activity, the same signals MOTS-c and exercise send, which is why fasting is the free version of several products on this page. Human mitochondrial outcome data are thinner than the signalling story, and aggressive fasting can cost muscle if protein and training are neglected.
Cold and heat exposure
Cold drives sympathetic activity and, in rodents, brown fat mitochondrial expansion. Sauna use is associated with lower cardiovascular mortality in Finnish cohorts, an association, not a chain trial. Both are stress signals the chain adapts to, with human mitochondrial measurements still sparse.
Humanin
The other famous mitochondrial derived peptide, 24 amino acids from 16S rRNA. Cytoprotective in cells and animals. Its potent analog reduced ROS in isolated mitochondria partly by decreasing Complex I activity, a protective trade, not an accelerator. No controlled human efficacy trial for energy outcomes.
BPC-157, TB-500, GHK-Cu
Popular healing peptides with preclinical tissue repair stories and, for BPC-157, 35 preclinical studies against 1 small retrospective clinical series in a 2024 review. None has a direct electron transport chain mechanism shown in humans. Placing them here would be marketing, not physiology.
Baseline medicine asks: is the chain broken? We ask: how good can it run?
Mainstream care intervenes when ATP production fails badly enough to become disease, and typically runs 5–10 years behind the research frontier. The Journal of Biohacking exists for the space above that line: measurable headroom, honestly graded. This simulator is the map; here is how to use it.